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Documentation Index

Fetch the complete documentation index at: https://docs.cosmosid.com/llms.txt

Use this file to discover all available pages before exploring further.

Using the command line, you can seamlessly integrate CHAMP™, Kepler, and more into your automated workflows and operations while also leveraging our cloud infrastructure. This guide will provide step-by-step instructions for running each of our workflows via the command line. You can find additional information on our CLI at https://github.com/CosmosID/cosmosid-cli/blob/master/README.md.

Install and Setup

Running the CLI

Example Commands: Running CHAMP

Example Commands: Running 16S ASV