Available Example Datasets
These datasets can be deposited into your account upon request for demo purposes
Shotgun Metagenomic Data
Human (CHAMP)
Stool
- Human stool by antibiotic treatment - Wilmann et al 2019
- Preterm Infant Probiotic Supplementation - Nguyen et al 2021 - PRJNA630999
- Infant stool by time points - Backhed et al 2015
- Infant stool by time points - Matharu et al 2022
- Clostridioides difficile-colonized patients - Fishbein et al 2022 - PRJNA748262
- HIV InfectionStatus Fecal WGS - Noguera-Julian et al 2016 - PRJNA307231
- Hazda Hunter Gatherer v Italy Gut Biome WGS - Rampelli et al 2015 - PRJNA278393
- Infant Probiotic Supplementation - Henrick et al 2021 - PRJNA390646
Skin
- Skin Microbiome by Antibiotics - Jo et al 2021
- Skin Microbiome in Cutaneous Lymphoma - Salava et al 2020 - PRJEB36953
- Skin Biopsy Metatranscriptomics - Leishmaniasis Cohort - Christensen et al 2016 - PRJNA307599
Oral
- Oral Disease Cohort - healthy vs mucositis vs peri-implantitis - Bazzani et al 2024 - PRJNA547717
- Healthy Saliva WGS - PMC8727345
- Human Oral Microbiome - Caselli et al 2020 - PRJEB36291
Vaginal
- Healthy Vaginal MetaAnalysis
Urine
- Urinary Tract Infection Microbiome - Neugent et al 2022 - PRJNA801448
Cerebral Spinal Fluid
- CLIMB CSF Shunt Infection Microbiome - Hodor et al 2021 - PRJNA707514
Eye
- Ocular Surface Microbiome in Dry Eyes - Tong et al 2022 - PRJNA886972
Milk
- Human and Bovine Milk - Yap et al 2020 - PRJEB38099
Tumor
- GI Tumor Microenvironment - WGS - Roelands et al 2023 - PRJNA941834
Non-Human (Kepler)
Environmental
- Aral Sea Desiccation Study - Wicaksono et al 2022 - PRJEB51329
- Honey Microbiome - Bovo et al 2020 - PRJEB36075
- Citrus Rhizosphere and Soil - Xu et al 2018 - PRJNA362455
- Global Wastewater Microbiome Consortium - Wu et al 2019 - PRJNA509305
Food
- Ground Beef by Antibiotic Treatment - Doster et al 2020 - PRJNA608954
- Food Microbiota WGS - Bloomfield et al 2023 - PRJNA849983
Wastewater
- Global Wastewater Microbiome Consortium - Wu et al 2019 - PRJNA509305
Monkey
- Rhesus Monkey Gut Microbiome in Parkinsons Disease - Yan et al 2021 - PRJNA574851
Mouse
- Mouse Gut (High vs. Low Fiber Diet) - PRJEB37383
Fish
- Fish Microbiome by Longitudinal Antibiotic Treatment - Kayani et al 2022 - PRJNA781418
Horse
- Horse by breed-conservation status (Equus przewalskii vs. Equus hemionus hemionus - Tang et al 2022 - PRJNA814825
Dog
- Dog Gut Microbiome by breed (Labrador vs. Beagle) - Coelho et al 2018 - PRJEB20308
Pig
- Pig Gut Longitudinal Fecal by Post-Weaning Diarrhea Treatment - Guitart-Matas 2024 - PRJNA1010706
- Groups: amoxicillin, colistin, gentamicin, trimethoprim/sulfamethoxazole, oral vaccine, control, no_treatment_control_with_acidified_water
- Pig Stool by Drug Treatment - Sanjuan et al 2024a - PRJNA984595
- Pig Lung Metagenomics (healthy vs. severe lesions) - Li et al 2023 - PRJNA732170
- Weaning Piglet Gut Microbiome - Holman et al 2021 - PRJNA629856
Cat
- Feline Gut (Obese vs. Healthy) - Ma et al 2022 - PRJNA758898
Poultry
- Gnotobiotic chick cecum dynamics post-inoculation - Thomas et al 2019 - PRJNA415593
- Chicken Gut Sampling - Kang et al 2021 - PRJNA658643
- Chicken Cecal Microbiome during Salmonella Infection - Bogomolnaya et al 2022 - PRJNA906507
Bovine
- Cow Rumen Microbiome by Breed - Sandri et al 2018 - PRJNA381851
Other
- Microbiota of Domestic Kitchen Sponges - Brandau et al 2022 - PRJEB49259
Amplicon Data
- Gut Decontamination for Stem Cell Transfer Patients - 16S V4 - Bekker et al 2019 - PRJEB28845
- Antarctic Snow Algae Mycobiome - ITS - Davey et al 2019 - PRJEB23732
- Antarctic Snow Algae Microbiome - 16S V4 - Davey et al 2019 - PRJEB23732
- Anaerobic Food Waste Digesters - 16S V4 - Svensson et al 2019 - PRJNA430711
- Mice on SPF or GF Diet - 16S V3_4 - Wu et al 2022 - PRJNA768608
- Umbilical Cord Serum Microbiome - 16S V1_3 - Turturice et al 2019 - PRJNA473573
Updated about 1 month ago