Hub now allows you to download your raw fastqs/sequencing data from the dashboard. The video down below gives you a quick walkthrough on how to download the raw fastqs for your samples.
You can download the URLs in either CSV or TSV format and then open it in a spreadsheet app to get the links. The URL column contains the download link for all of your data row wise.
How can you download raw fastqs for multiple samples all at once using UNIX terminal from the download URL CSV/TSV file?
The spreadsheet also contains CURL, POWERSHELL and WGET commands to allow easy downloading of raw fastqs from the terminal.
The bash command for downloading multiple files using the download URL CSV/TSV
## Downloading multiple files using download URL CSV cat samples_download_urls_2023_03_23_21_58.tsv | cut -f4 -d "," | tail -n +2 | while read line; do bash; done ## Downloading multiple files using download URL TSV cat samples_download_urls_2023_03_23_21_58.tsv | cut -f4 -d | tail -n +2 | while read line; do bash; done
Updated 15 minutes ago