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CosmosID

Getting Started

  • Quickstart
  • Create an Account
  • Upload Samples
  • BaseSpace Import
  • NCBI SRA Import
  • Rerun Samples with New Workflows
  • Your Account Details
  • Cohorts & Metadata

Your Samples

  • Organize Your Data
  • View Results
    • Sample Abundance Table
    • Sunburst
    • Bubble Graph
    • Collapsible Tree
    • Radial Tree
    • Donut Graph
    • Stacked Bar Graph
  • Unified Relative Abundance/Combined Kingdom Analysis
  • Download Your Results
  • Download your Raw Fastqs

Comparative Analysis

  • Create
  • View
    • Matrix Table
    • Heat Map
    • Stacked Bar Graph
    • 3D PCA
    • Alpha Diversity
    • Beta Diversity
    • LEfSe Biomarker Discovery Analysis
    • Read Statistics

Bioinformatics

  • Bioinformatics Concepts
  • Metagenomic Classification
  • Amplicon 16S Classification
  • Amplicon ITS Classification
  • Functional Classification
  • Filtering
  • GenBook™ Database Search
  • Sequencing QC metrics
  • Host Read Removal Workflow

API

  • API Documentation

Technical Appendix

  • Definitions
  • FAQ
  • Methods
  • Dark Matter Database (Beta)
  • Bacteria And Fungi Database Updates
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API Documentation

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For detailed instructions on using our API please go here: https://github.com/CosmosID/cosmosid-cli/blob/master/README.rst

Updated almost 4 years ago